Of course it isn't 1Mohm input impedance. It is 1Mohm//11pF, and it is worth working out the frequency at which the capactive impedance starts to dominate the resistance.
If you are using bog-standard *10 "high impedance" probes, make sure they can be compensated with a 11pF scope.
Apart from that, you can always use a 50ohm feedthrough terminator if you are looking at RF signals, or with a "low"-impedance *10 Z0 probe (N.B. the quotes - Z0 probes are actually higher impedance than so-called high-impedance probes!)
At 100MHz you could also use a 50ohm terminator on a BNC T-piece.