The adjustment procedure is in the service manual, or am I mistaken?
page 19.
mod:
Wait, are you talking about this?
Alignments Are Not Calibrations
Alignments are adjustment procedures run by the instrument using internal reference signals and measurements.
Calibrations can only be performed at a Tektronix service center and require the use of traceable test equipment (signal sources and measuring equipment) to verify the performance of the instrument.
Maybe that's not what I had in mind.
By calibration, do you mean you want to adjust the internal oscillator?
If so, it may be impossible as the manual says.
The adjustment that can be controlled from the settings menu is probably a common alignments in SA.
It would not be an calibration.