Like the TDS600/700, the TDS3000 series can also do AC coupled with 50R termination. It displays a warning that the lower BW cutoff is 100kHz.
If you want 50R termination, the DC level already has to be fairly low (5V RMS max). You could try bringing the trace on-screen by using the offset. Offset ranges are +/-0.5V, +/-1.0V, and +/-5V, depending on the V/div setting.
Or just use an external thru terminator with sufficient power rating.