The only exact way i can phrase it is later firmware versions may tweak it.
Thats possible. I'm using old model SDS1102X and when I flashed firmware to the latest version, I got unexpected result.
Usually I'm using oscilloscope for spectrum analysis, by recording large raw sequence and then processing it with FFT on the PC. I'm using FFT with 1-4 million points, so it very sensitive. With latest firmware I got a lot of distortions.
It was below -80 dB, so in the time domain the difference is not significant.
Here is firmaware 2.13R5 (which works good):

And here is firmware 2.15R10:

But in the frequency domain it looks much worse:

I'm not sure why it happens, but these artifacts was added at the time when Siglent released new X-E model. So, I think they both may share the same signal processing algorithm.
After all, I didn't find the way to fix it and since I need clean spectrum, I rollback to the old 2.13R5 firmware. It helps and distortions disappears

So, the firmware change may lead to significant change in measurement results.
It will be very interest if someone can check if this issue exists on X-E model with latest firmware.