Sadly NO !
I assume that you are talking about the actual microbolometer window, rather than any protective window that has been mounted in front of the microbolometer ? The microbolometer window is made from an IR transmissive material that can be thin silicon, Germanium or an IR transmissive Chalcogenide glass. The window has an anti-reflective coating applied to it, similar to that found on the associated lens system. Sadly the AR coating on the window is very fragile and easily damaged. It is possible to clean the a window with suitable tools and fluids but a scratch is permanent and any effort to “buff it out” will destroy the AR coating and still not remove the scratch that is in the window material. Remember, the only way to remove a scratch is to lower the height of the material around it to the depth of the scratch trough. Not possible on microbolometers without specialist kit and the ability to apply a new AR coating. A fresh calibration of the core can sometimes reduce the effect of a defect in the windows surface but, as the defect sits a distance from the actual pixels, there can still be optical anomalies when a lens is fitted due to beam angles etc.
Fraser