The filter is a good idea, yes.
Hmm, do you really need 3A converters for that amount of stuff? Seems like a few hundred mA would do. The downside is low efficiency, running 3A converters at light load -- if that's the case. May also be audible noise (due to burst mode operation). If the 3.3V load isn't much (under 500mA), I'd also consider using an LDO, so only the 5V converter -- also saves cost and space.
Having operation down to 6 or 7V or so, will keep it operating under cranking conditions. If you need more, a hold-up capacitor may be desirable; but mind that keeping it up for more than some ms takes quite a lot of capacitance, and then you might want a circuit to limit its charging current, etc. At which point you can use basically as much as you want, throw in supercaps or a battery for all that matters.
Tim