Using a MCU is pointless here unless you want to actually on the fly modify the injector timings using a mapping or something.
Just treat being pulled to GND as an input signal and use that signal to turn on some transistors that pull a output signal to GND on the output. This way you make a "signal repeater" in just discrete transistor logic. Then you just need to add an AND gate in between to enable or disable the bank of outputs. Once you have that you just need to generate the two enable signals for each bank. This is easily done by implementing a delayed turn off circuit (can be a diode capacitor resistor combo) for both enable signals. To finish it off we just need to create the two enable signals from the input of "A or B", we can do this by just inverting the A signal to get B. Then to create the A signal with the 2.5V logic you want to have we use a analog comparator to compare the input against a 2.5V reference voltage.
All this sounds like an odd way to do it tho. If you really wanted to smoothly transition to the other injectors you would actually want to slowly reduce the duty cycle time on one bank and slowly increase the duty cycle on the other bank. Doing this would get complicated using just analog circuitry, so this is where you might use a MCU.
What you said, about on the fly modifying injector timings would be ideal, The logic board would beable to determine RPM due to injector cycle rate and the 0-5v sensor i referred to is a MAP sensor, aka Boost pressure.
I'd like to beable to adjust when the injectors swap over (what boost level) and the length of time there is a crossover. And as you said, it would be more ideal to back down the duty cycle of one set while ramping up the injector duty cycle of the other. But i dont think that would be possible due to the wide range of available injectors, flow rates/pressures and fuels. Also the ECU is the one that determines injector duty cycle based on the o2 Sensor readings and the injector information entered into the ECU (i'll include a picture showing the differences between the two i will be testing with).
Once the crossover of the two injectors happens, it will run pig rich in a few cylinders before the crossover is complete. but the massive difference in flow characteristics of the two injectors will require specific injector tuning in the fuel table (VE) table. I can closely match fuel injector sizing vs fuel used.
For instance, my idea was to run Pump 91 Gas on 83lbjr injector set A till say 10psi of boost, then the 224lbhr injector set B comes on. but its flowing Methanol. which requires about 2.3 times more fuel to hit stoichiometric values. So my original injector scaling would only be about 14% off. However, if i did something like run Race Gas through those massive injectors, my scaling would be off by 268%.
This isnt a huge issue as even this scale can be tuned for, and since it only activates while the engine is at high load scenarios, it wouldn't effect any drivability or idle, i will include a picture of the specific area in the VE table you would see the methanol injectors operating in, this makes the fine level controls of the injector somewhat less important.
I'd really like to beable to enter two sets of injector data, and have a fuel type offset so the injectors can crossover seemlessly. but the math and complexity of that is beyond my knowledge currently. although it would be super useful in the future which makes me think the MCU is probably the right choice since once the hardware is proven, i can work on the software long term.
I really appreciate the help, for every post i end up having to do 30-45 minutes of research just to comprehend whats being said which by itself is a huge help, i am learning about specific relevant components.
[EDIT] I just realized that i might actually be wrong about changing injector duty cycles via the MCU, if i can get the injector scaling between the two very close, its possible i could change the duty cycle of each injector. This opens up a whole world a possibilites, such as being able to reduce injector set A's duty cycle to 70% while running Injector Set B's duty cycle at 30%. this would be the truest sense of octane on demand. a 50/50 mix of pump gas 91 and methanol would have an effective octane rating of 105, exceeding the requirements for most enthusiasts. Thank you for the idea, it would not even have occured to me that it was possible.