Programming Zynq 7000 board via FT232 breakout board

[HasanSyr]

Im trying to program my board via the FT232 because I'll be using that chip in my own development board around the same SOM my dev board uses (MYD-C7Z020 V2). My board doesn't show up in HW manager. The programmer shows up but the board as a device doesn't. Im also confused with the selection, on the silkscreen it says JP3 Sel. Indep. JTAG but BOOT_MODE pins boot from JTAG when both bits are 0.

The pinout on the schematic is also confusing, why is there a label called CON_JTAG_TDI while on the symbol pin it says TDO and another pin on the symbol says TDI? It has something to do with FMC I guess but I don't get it.

I have programmed the FT232 chip using Xilinx's `program_ftdi` utility.