I make homemade boards, but the same applies and I've done it before with seeed:
Put all the boards into one CAD file, with silkscreen separating them, then snip yourself with a PCB gillotene (VERY handy) or for small boards (2") a pair of tin snips works wonders too.
Don't bother using hacksaws or other bladed saws, the blades will wear very quickly and the dust (although smells quite nice) is horrible,
They won't cut them out for you, just around the main dimension.