Not much help, but I have recently tried to use tera term for an esp8266 board and had the same problem. I was changing baud rate when booting the board, so would get garbage characters before the baud rate was changed which usually (not always) would cause the problem you described. I have no answer to 'fix' tera term but I just used PuTTY instead and had no problems when running that. I run PuTTY on Windows and Linux, and it works good, but I always struggle with copy/paste in that program (especially on the Linux version).