Sure, sounds good. Don't forget the shielding, and use lots of ceramic caps and ferrite beads too (making sure the beads are rated for several times more amps than required -- they aren't rated the same way regular chokes are). The challenge in RF terms is getting a good filter at asymptotic frequencies, but ESR and ESL (and the respective characteristics of chokes) poke your transfer function full of zeroes, making dips and peaks at various high frequencies.
Also mind common mode noise, which can be more important than differential (e.g., if the equipment has filtering on internal sections anyway). Assume the switcher acts like a noise source between the input and output cables, and go from there. Example, if both sides of the supply are firmly grounded -- at RF, not just galvanically -- it should be fine; but if the equipment is not grounded, that noise can be superimposed over the whole thing, and find its way along input and output cables, introducing ground noise and weird stuff like that.
Tim