The better question is how one would measure such a thing. I don't recall anyone had an electrometer handy during the incident. Did they give a source or is this "1MV" factoid completely made up?
Normal atmospheric electric field is about 100 V/m. If peak altitude was around 600m, that's only 60kV potential -- and that's assuming charge equilibriated during the flight and then, say, someone dropped a wire from it down to the ground, where that potential could be measured.
By electrostatic induction, simply flying from ground, up and down, the potential on the vehicle follows altitude and no charge results from the trip. If the charge is equalized at each peak of a trip, some energy can be extracted (i.e., flying up, then discharging, then flying down and discharging again, etc. etc.). But no charge lost means it simply follows the electric potential versus altitude, nothing interesting happening at all.
Aircraft normally pick up additional charge due to triboelectric effect, flying through particulates, dust, rain, snow, that sort of thing. Or maybe even the air itself, I'm not sure about that. There might not be much of these on a clear day, but there's always some, and a trip is long (say, some hours), so it doesn't take much charge per particle to add up. The charge is in turn dissipated through corona points near the wingtips, etc. And additionally, when fueling, by a ground strap to the fuel truck / station, also because tires and passengers can generate charge by the same effect.
Flying (passively) on the wind, probably doesn't generate much charge, at least I'd assume it's a necessary aspect that the charged particles are blown away from the vehicle by wind shear (else they'd rub against and displace some charge, but then stay stuck in place).
Tim