If your complex numbers are represented as a magnitude and phase angle (r,theta) rather than real and imaginary parts (x,y), then you will have to convert from polar coordinates to rectangular coordinates before you do the interpolation.
No, you don't have to do that conversion. Whether or not you do that conversion depends on the meaning you are assigning to the numbers.
For an oversimplified but concrete example, consider an easterly wind for one hour followed by a westerly wind for one hour. What is the "average" wind? Clearly there are multiple equally correct answers.
I don't think this is clear at all.
You can't do linear interpolation on r and theta like you can do with x and y.
Correct, but you are presuming a linear interpretation is the only valid thing to do; it isn't.
I am not a mathematician, but I suspect they will start muttering phrases such as "inside a complex hull". Or not 
I will have to disagree with you on this, unless you can provide a concrete counter-example.
Let me use your wind example to illustrate.
Suppose a boat drifts on the wind in a northeasterly direction for one hour traveling 3 miles, and then drifts in an easterly direction for one hour traveling 2 miles. What is the average drift speed and direction of the boat?
If you tried to average this in polar coordinates you would say the drift speed is (3+2)/2 = 2.5 miles per hour, and the drift direction is, what? Do you average that by time or by distance, since direction is neither? Clearly this is not going to work out.
In fact, polar coordinates are not additive (interpolation is adding with scale factors), and you can't do addition or subtraction with them in terms of magnitudes and angles and get a useful result.
To solve the averaging problem you have to go via rectangular coordinates. You figure out where the boat ends up and then reference that back to the origin. The boat ends up 4.12 miles east of its original position and 2.12 miles north. The boat has therefore traveled 4.64 miles from the starting point in 2 hours, giving an average speed of 2.32 miles per hour. The direction of travel is arctan(4.12/2.12) = 62.8°.
The average drift speed of the boat has therefore been 2.32 miles per hour on a bearing of 62.8°.