Yea, the lack of smoke or obvious damage is why I was thinking it may have been the sealed EMI filter.
One nice thing about the 1630 series is the CPU and acquisition boards can be easily removed from the motherboard, as well as ability to disconnect individual ribbon cables for CRT and keyboard from the CPU board, making narrowing down the problem area a bit easier in principle. So far, the power supply alone looks to work fine, though unloaded, the -2.4 rail is running at -3.4. Did learn that this SMPS does not like to start when using a variac to bring up voltage, so it was a bit of a "grit your teeth and duck" moment when first powering it up at full mains.
Found something odd with the -5.2v path on the motherboard showing just 17 ohms to ground. The only things on the MB are connectors and branches off the -5.2 to four resistor networks (each with a 10 nF ceramic cap to ground) that appear to be voltage dividers which if my thinking/math is correct will supply -3.0 volts to the acquisition boards, but this is a guess. The otherwise very comprehensive service manual doesn't say much about the MB. I lifted each cap just to check and still had the 17 ohms. Anyhow, I am getting -5.2 v at the ps test point, with no over-current warning LED.
Next step is to add back the cpu board.