There are a lot of articles available on the web that you can read about the Nyquist frequency, and the assumptions one makes, so I will not try to summarize that theory here.
That said, I think you are confusing the rise time of the scope and the rise time of the signal being measured. To accurately measure a 650ps rise-time signal, a 650ps rise-time scope is definitely not good enough, as the measured rise-time will be a combination of the rise time of the scope and of the signal. The usual formula used (for scopes with Gaussian frequency response) is that the displayed rise time is the square root of the sums of the squares of the signal's rise time and the scope's rise time. Thus, a 650ps rise time signal on a 650ps rise time scope will measure as 919ps --- hardly an "accurate" measurement. If, however, the signal's rise time is double that of the scope's, the measured value will be only about 12% off.
In case the TDS3052 does not have a Gaussian response, but more of a flat one, the formula above does not hold, but the measurement accuracy should be actually a bit better than what this formula gives.
Finally, keep in mind that while 6 or 7 samples during the rise time (as would be the case for a signal rising at 1.3 ns) are not sufficient to see the shape of the rising portion (and indeed that is being heavily interpolated), it is quite enough to find out the time it takes for the signal to rise from 10% to 90% to within the accuracy stated above.