That is a really good photo, thanks. Looks like I have the late version, because I have the two TO-220 devices on the heatsink. The relays on my board look a little different, but I'm sure the functionality is the same. Oh, and Q20 is HP part 1854-0404. According to the googling I did, that crosses over to a Texas Instr. AST4260.
Another random note: When I opened the SpecAn up the first time and inspected things, I found that the magic smoke had escaped from C21 on the Low Voltage Power Supply board, and I replaced it. That's also what led to testing all the transistors. They all test good, but something's up because the symptoms change when I mix transistors around. I might do some preemptive replacement of them.
However, I am a dummy on a couple of fronts. I actually paid for the pdf off of fleabay, then discovered that I already had a free download from when I had a 3580 a few years back. I have noticed a few discrepancies in the schematic and layout docs. On the schematic page for the Low Voltage power supply, the TO-220 devices are both labelled Q3. Actually, the top "U3" is indeed U3, and it's an LM317 voltage regulator. The bottom "U3" is in fact U4, and it's an LM337 voltage regulator.
What else? With regards to the labels for the card-edge connectors, it was not obvious to me if the lettered pins were component or solder side and vise versa. So I traced a few of those, and found that numbered pins were on component side and the lettered pins on solder side. I don't have adjustment pot R39 on my A13 Deflection Amp board, and my serial number is below the one mentioned, so I guess the note on page 7-28 means I have the A40 board somewhere.
I'm measuring the +/- 11.5V across the output filter caps C1 and C6 on the Low Voltage Power Supply. If I disconnect J1 on the control board (thus disabling the HV), the -11.5V previously measured at -6.5V will jump to -18.5V. So something about running the HV seems to be overloading the -11.5V rail.