What about the differences in the wiggles? The amplitude seems similar, but does one look better than the other?
The wiggles are affected by signal generator output mismatch and cable length.
To optimize the output impedance, you can connect a high quality inline attenuator of at least 6 dB (more is better) directly at the generator output.
If such an attenuator is not available, you can try to lower the signal level until you hear a relay acting inside the signal generator.
Even with all these measures, there might still be wiggles left, e.g. just because of the characteristic impedance of the cable, which should nominally be 50 ohms, but still is subject to tolerances.