Hi KungFuJosh,
I still don't think it has much to do with the number of waveforms per second.
The effect I'm seeing after some experimentation depends on the sample clock and the waveform being measured.
I'll post some pictures later today; also, the effect only occurs if the waveform being measured has very steep edges—say, less than 2 nsec.
I am currently using my HF generator (Siglent SSG3021X) to measure the frequency response of the Magnova and the Siglent SDS2104X with the 500 MHz bandwidth option installed.
The Siglent SDS2104X HD does not exhibit the pre-aberration I indicated.
However, the bandwidth profile between 50 MHz and 600 MHz is clearly different on the Siglent SDS2104X HD then the Magnova.
I also see other anomalies that I don't see in the same way on the Siglent oscilloscope.
With a 200 MHz sine wave and approximately 100 mV rms applied to the oscilloscope, I again see something that shouldn't be there at a time base of 50 nsec.
See the two images below with different time base settings.
I didn't scale down the image with the 50 nS time base because doing so would cause too many image processing errors.
200MHz ~100mV RMS and 2nSec time base

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Same signal and now 50nSec time base, and no there is no modulation on the signal from my HF generator.

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Lets compare with the SIGLENT SDS2104X HD
200MHz ~100mV RMS and 2nSec time base

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Look Ma! no amplitude variation on the Siglent


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Then there's another counter issue: I've tried a variety of combinations, and while not all of them result in an error, the two measurements below do.
Again, the 200 MHz sine wave signal of 100 mV from the RF generator.
The fact that the reading isn't exactly 100 mV is due to the frequency response of the oscilloscope.
In the first image, everything is OK; the counter accurately displays nearly 200 MHz.
Here, the signal to be measured is fed into channel 4, and the counter function is also set to channel 4.

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It's the same situation, but now I've also turned on channel 1—which I'm not using for anything else—and then the value of the counter function is no longer correct...
If I now turn on channel 2 as well, the counter still shows incorrect values.

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And now for the fun part: if I turn on channel-3, the counter is correct again—Bingo!

Always fun with Magnova!

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Time is up for now, but more to come.
Let me know what my measurement aberations are.

Kid regards,
Bram