I would need to dig into complete specs of that generator but keep in mind that there are several factors:
- not so big amplitude of signal so lot of things can impact it and will impact it
- results are calculated so oscilloscope noise may play bigger impact than one could think for result
- scope has limitations on approximation and thus calculations
- your cabling may receive something even from your body, some EM, etc
- something maybe coming thru filtering of generator/scope both from mains...
Generator is old so filtering in PSU maybe maybe not great nowadays (but it should).
There is some crosstalk between scope channels - you have some 2000x HD model if I remember correctly so it has a nice dampening compared to most but this can also play a factor in some cases.
There is a reason why we use one and "best" channel in scope in a room with stabilized mains power, controlled EM etc to make small values measurements (thou usually smaller than this)
but with this we are getting into metrology area with all its oddities, fancies etc and sometimes the question is if you really wanna know or can achieve it

You may also develop an sickness/need for top notch equipment just to be satisfied but it may not play a role at all on daily tasks.
For example I would not have paid any attention to such small variation on my old 1054Z that I use for usuall stuff and it is more than enough for it - but its resolution is to small to see things. If I would shown you side by side for example HD314MSO with 14bits we could estimate which scope does a better job or second unit like yours to see if this is an expected behaviour for this ADC and maths conversion. Thing is that you have a very nice scope but diggin too much you may stop liking it. This applies to every scope on planet if you find a proper angle
