There's zero possibility that the wires could ever be as short as in the real U180.
That said, most of the wires that are visibly "long" are not in the critical path. For example, nothing related and prior to the flip-flop has strict timing or settling requirements, since the flip-flop latches and re-synchronizes those signals.
The tracks in the critical path, related to the resistors, the switches, etc., are as short as reasonably possible. Some slight further reductions could be possible if components are placed on the back, but that also comes with a few compromises. For example, I tried - mostly successfully - to wire everything from the flip-flops onward in the top copper only, avoiding transitions between layers, and directly over a single continuous ground plane, to provide the best signal integrity I could.
There are some tracks that are longer than necessary, such as those after the flip-flop, but those were to equalize track lengths. (It's far from certain that the equalization will help with noise, etc., but there's not much down-side, and it's worth a try.)
Where does the length pain me? The clock line in particular is relatively long, plus it has to go to two pins. I don't like that, but dealing with it was judged a better compromise than moving the flip-flop close to the clock pin.
Of course, if you have specific ideas about improvements, I'm eager to hear them.