Here is my suggestion for a rather simple multislope converter controlled by an µC (AVR Mega 8 or similar). The circuit is simplified by leaving out a few more obvious parts, like the supply and decoupling. A clean supply and good decoupling is likely very important though. The circuit is to a large part inspired by the HP34401 ADC and the more classical multi-slope ADCs like in the Keitley 2000, with rundown phase with fast and slow slope. In addition the µC internal ADC (e.g. 10 Bit) can be used to measure the residual voltage.
The part on the left is an amplifer for the reference voltages. Noted as +-12 V though the right value would be more like +11 V and -12 V, thus two intentionally slightly different values.
IC1 A and IC1 B are the two OPs for the integrator. The 4 inductors at the switches (74HC4053) are ferrite beads inspired by the 34401 design. Not sure they are actually needed of might want parallel resistors in the KOhms range. This would be a part to check with real hardware. There is no extra slow slope, but combining the two slightly different slopes should work as a slow slope as well. The three resistors (shown as 50 K) at the 4053 should be the main critical resistors in the ADC circuit. Using 3 resistors of same value should give reasonable good compensation for the on resistance in the 4053.
IC4 is working as a slope amplifier in inverting configuration. Using the JFETs Q1/Q2 is optional if rather low resistors are used for super low noise - not sure this is really woth it unless one would go for 8 digits. A first test could use just a resistor here. The inverting slope amplifier has the advantage that the output voltage range is limited to about +- 0.7 V around the ground / reference level. In addition there is little load to the ground / reference level. Here the reference level is set to about 1 V above ground by a divider. This allows to use the µC internal comparator to detect the crossing of the reference level.
As a kind of second amplification stage there is the OP IC6B as an inverting amplifier with an adjustable reference level. This level should be rather close (or identical) to the 1 V level used for IC4. This amplifier is supposed to be powered from 5 V just like the µC and amplifies the residual charge signal for the µC internal ADC. In addition the inversion is needed to get a hardware zero phase.
Q3 and Q4 (small N-MOS FETs - maybe other types, preferably small ones) are used as a switch for the zero signal. The two fets might be needed for good isolation for good precision. Depending on the mode of operation one might even get away without this HW zero path. R61 is used to add a little bit of negative voltage, to compensate for the shifted reference level used. The zero level would be at about 1/10 (set by R60/R61) of the -12 V reference and thus about 1.2 V (for the ADC) with the resistor values given.
Feedback during the runup phase will be via an extra comparator IC2. Comparison is towards a fraction of the input signal (at LSP1). The combination is also used in the 34401 and many other HP meters, though with using an inverted input signal added to the integrator output. Comparing to the input signal gives kind of a preview to the future integrator state. Due to this kind of preview, the speed of the comparator used for the feedback should not be that important - so chances are one can get away with the lower power 393 instead of the faster, but higher power LM311. Accuracy of FB during runup is not that critical anyway.
AFAIK the AVR µC does not use an internal PLL for it's clock. So I hope to get away without extra synchronization flipflops for the control signal. Depending on the µC used these might be a good idea (for the 2 reference signals). The control is separate to allow for using both refs at the same time.
The one point I am still not sure about is the shifted level for the slope amplifer. One drawback I get, is that the ground of the ADC is somewhat coupled to the µC ground for the µC internal ADC. It also needs quite a lot of extra resistors to shift levels. Maybe there is a better way ? I don't really like the idea of using something like a +-2.5 V supply for the µC, though it might be an option.
From the software side the AVR is fast enough to control the FB during runup. This is with SW in assembler and using the run time for the timing, which is kind of OK as the AVR has a predictable timing (no cache) and the software is not that complicated. Here it is more the integrator HW that sets the speed limit. I would prefer a rate slower than in the 34401, more like the K2000. It looks like the 34401 could use it's high frequency FB only at the price of a reduced input range and long neutral phases - however this adds quite some noise.
For the rundown phase the control by software (instead of dedicated HW) causes some extra delay on the order of 300 ns and thus similar to the delay due to the comparator. I don't think a slightly slower rundown phase should be a problem for a first test. When using the ADC for residual voltage, one might not even need the slow slope (except for super high resolution) and the hardware zero phase.